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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_021720-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 31993.5 Da PI: 6.923 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.2 | 5.8e-11 | 12 | 55 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e ++ + +a + ++ + +W++Ia+ ++ g+tl ++k+++ NNU_021720-RA 12 WSREQEKAFENALATHPEDsedRWEKIAADVP-GKTLSEIKHHYE 55 ********************************.**********96 PP | |||||||
2 | Myb_DNA-binding | 40.4 | 6.9e-13 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky NNU_021720-RA 121 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKY 165 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.439 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 9.8E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.67E-10 | 10 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.05E-9 | 12 | 58 | No hit | No description |
Pfam | PF00249 | 1.8E-8 | 12 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-5 | 12 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.212 | 113 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-16 | 116 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-10 | 118 | 168 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.1E-17 | 118 | 168 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.89E-9 | 121 | 166 | No hit | No description |
Pfam | PF00249 | 1.2E-10 | 121 | 165 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-10 | 121 | 164 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MTTDETGDSS LWSREQEKAF ENALATHPED SEDRWEKIAA DVPGKTLSEI KHHYELLVED 60 INGIESGRVP LPCYVSSEGS MDYASEAGAA KKGGNFGNFQ NDSSHGVKTQ RSDQERRKGI 120 AWTEDEHRLF LLGLDKYGKG DWRSISRNFV VSRTPTQVAS HAQKYFIRLN SMNKDRRRAS 180 IHDITSVGNG DIAAPQGPIT GQNSAPSTGA STGKSNKQSP QPQPGAPGVG VYGTTTIGQP 240 IGGPLISAVG TPVNLPAPAH MAYGVQPPVH GSVVPGAPMN VAPMTYPMPH ASAHSAVSSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-18 | 7 | 81 | 6 | 80 | RADIALIS |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010279472.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010279473.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-61 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0L9UU29 | 1e-162 | A0A0L9UU29_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA07G28310.1 | 1e-159 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-114 | MYB family protein |